Chinese cherry(Prunus pseudocerasus L.) is an allotetraploid species and exhibits natural self-compatibility.However,the full-1ength cDNA sequences,functional analysis and the transcripts of S-RNase alleles in Chinese cherry cultivars are not known.In the two cultivars Taixiaohongying and Laiyang Short Cherry with S1S2S3S4 genotypes,two S-RNases were transcribed in Northern blotting,and the two full-length cDNAs of S-RNase were cloned and analyzed.As the result,the transcribed S-RNnses were S1-RNase and S2-RNase.The two complete cDNA sequences of S1-RNase and S2-RNase were registered as EU073938 and EU073939,respectively,and had characteristic structure of rosaceous S-RNases based on their sequences indicating that they had normal function for S-RNase in the style.The S3-RNase and S4-RNase were not transcribed in the style style and were nonfunctional for S-RNase,so S3m and S4m could be used to represent the nonfunctional S3-RNase and S4-RNase.The phylogenetic analysis implied that the S-RNases of Prunus,including Chinese cherry,had lower intra-specific similarity and diverged earlier than the divergence of species in Prunus.