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Aiming at the demand for optimization of hydrodynamic coefficients in submarines motion equations, an adaptive weight immune genetic algorithm was proposed to optimize hydrodynamic coefficients in motion equations. Some hydrody-namic coefficients of high sensitivity to control and maneuver were chosen as the optimization objects in the algorithm. By using adaptive weight method to determine the weight and target function, the multi-objective optimization could be transla-ted into single-objective optimization. For a certain kind of submarine, three typical maneuvers were chosen to be the objects of study: overshoot maneuver in horizontal plane, overshoot maneuver in vertical plane and turning circle maneuver in horizontal plane. From the results of computer simulations using primal hydrodynamic coefficient and optimized hydrody-namic coefficient, the efficiency of proposed method is proved.