Use of family structure information in interaction with environments for leveraging genomic predicti

来源 :作物学报(英文版) | 被引量 : 0次 | 上传用户:hanfeizifly
下载到本地 , 更方便阅读
声明 : 本文档内容版权归属内容提供方 , 如果您对本文有版权争议 , 可与客服联系进行内容授权或下架
论文部分内容阅读
The characterization of genomes with great detail offered by the mod genotyping platforms have opened a venue for accurately predicting the genotype-by-environment interaction (GE) effects of untested genotypes in different environmental conditions. Already developed statistical models have shown the advantages of including the GE interaction component in the prediction context using molecular markers, pedigree, or both. In order to leverage the family information of highly structured populations when pedigree data is not available, we developed a model that uses the family membership instead. The proposed model extends the reaction norm model by including the interaction between families and environments (FE). A representative fraction of a soybean Nested Association Mapping population (16,187 grain yield records) comprising 38 bi-parental families (1358 genotypes) observed in 18 environments (2011, 2012, and 2013) was used to contrast the proposed model with three conventional prediction models. Two cross-validation scenarios (prediction of tested [CV2] and untested [CV1] genotypes) with a twofold design (50% for training and testing sets) were used for mimicking prediction situations that breeders face in fields. Results showed that the family factor in interaction with environments explains a sizable amount of the phenotypic variability. This helped to improve the predictive ability with respect to the main effects model (GBLUP) around 41%(CV2) and 49%(CV1), and about 17%with respect to the conventional reaction norm model. The inclusion of the FE term not only improved the global results but also significantly increased the prediction accuracy of those environments where the conventional models showed a very poor performance. These results show the importance of taking into consideration the family structure existing in breeding programs for improving the selection strategies in multi-parental populations.
其他文献
“金财工程”是在发展社会主义公共财政的背景下提出的电子政务工程,是推行财政改革、建设现代财政制度的技术手段和有力抓手。在顶层设计环节,“金财工程”基于管理信息系统
Component-based development needs a well-designed components library and a set of support tools.This paper presents the design and implementation of a component
期刊
WebGIS is the result of combining the technology of Internet with that of Geographic Information Systems (GIS).This paper aims at some problems in the developme
期刊
国有企业是我国国民经济的重要组成部分,是国家宏观调控的重要主体之一。烟草行业作为性质最为特殊的国企,由于其绝对的垄断地位,一直以来给社会公众造成了“高福利、低素质、垄
A new admission control algorithm considering the network self-similar access characteristics is proposed.Taking advantage of the mathematical model of the netw
期刊
微型企业发展具有促进经济增长、吸收就业、促进社会和谐发展的多重功效,世界各国都在不同程度地扶持微型企业发展。我国初具规模的微型企业发展开始于2010年,在重庆微型企业
目的评价体外冲击波治疗对大鼠糖尿病神经病变的影响。方法健康成年雄性SD大鼠18只,体重250~300 g,采用随机数字表法分为3组(n=6):对照组(C组)、糖尿病神经病变组(DPN组)、冲击波治疗组(ESWT组)。采用腹腔注射链脲佐菌素60 mg/kg的方法建立糖尿病神经病变模型。ESWT组于建模成功后第1周(T1)、第2周(T2)、第3周(T3)、第4周(T4)时行左后肢坐骨神经分布区域冲击波
人口老龄化是我国新时代新的基本国情,也是世界性的重大问题.联合国把人口老龄化问题区分为人道主义和发展两个方面的问题,其中人道主义方面的问题在很大程度上就是养老问题,
期刊
Many research indicate a lot of money and time are spent on maintaining and modifying program delivered.So the policies to support program comprehension are ver
期刊
2015年3月28日,易通股份?山东省分公司周年庆典暨济南市众筹股东分红大会在山东省新泰市隆重召开。  出席会议的公司领导有:易通股份副董事长康玉川先生、易通股份执行总裁张启文先生、易通股份人事、客服中心副总裁孙滕鎂女士等,还有远道而来的易通股份山西省分公司总经理任科睿先生及同仁;参会人员包括众筹股东、公司会员及各界相关人士,总人数逾300人。  会上,易通股份副董事长康玉川先生、易通股份执行总裁